Galaxy Mcp
MCP server for Galaxy bioinformatics platform - connect, execute tools, and manage workflows
GWAS Bioinformatics MCP Server
Access 30+ bioinformatics tools from 14 databases.
proteus
Use this skill when the user asks you to work with protein structures, molecular visualization, or structural biology tools. TRIGGER when: the user mentions PyMOL, ChimeraX, AlphaFold, Rosetta, PyRosetta, UniProt, RCSB PDB, PDBe, PDB files, protein structures, molecular rendering, pLDDT, RMSD, structure alignment, binding pockets, drug-target analysis, cryo-EM density maps, homology modeling, or protein design. Also trigger when the user opens/loads .pdb, .cif, .mmcif, .sdf, or .mol2 files, or .mrc density maps (see references/chimerax.md for cryo-EM workflows). DO NOT TRIGGER for: general biology questions with no structural component, bioinformatics sequence-only tasks (BLAST, MSA), or genomics/transcriptomics.
ai-scientist-evaluator
Critically review, score, compare, and rank one or more AI scientist outputs for biology, bioinformatics, computational life science, or adjacent research tasks. Trigger when the user asks to evaluate notebooks, code, figures, analyses, manuscripts, software, or final reports produced by AI scientists; compare multiple AI scientists on the same task; judge publication readiness; or audit rigor, reproducibility, novelty, and task completion. Do not use this skill to perform the original research task itself unless the user is explicitly asking for a reviewer-style audit of already produced outputs.