adaptyv
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
biomcp
Search and retrieve biomedical data - genes, variants, clinical trials, articles, drugs, diseases, pathways, proteins, adverse events, pharmacogenomics, and phenotype-disease matching. Use for gene function, variant pathogenicity, trials, drug safety, pathway context, disease workups, and literature evidence.
proteus
Use this skill when the user asks you to work with protein structures, molecular visualization, or structural biology tools. TRIGGER when: the user mentions PyMOL, ChimeraX, AlphaFold, Rosetta, PyRosetta, UniProt, RCSB PDB, PDBe, PDB files, protein structures, molecular rendering, pLDDT, RMSD, structure alignment, binding pockets, drug-target analysis, cryo-EM density maps, homology modeling, or protein design. Also trigger when the user opens/loads .pdb, .cif, .mmcif, .sdf, or .mol2 files, or .mrc density maps (see references/chimerax.md for cryo-EM workflows). DO NOT TRIGGER for: general biology questions with no structural component, bioinformatics sequence-only tasks (BLAST, MSA), or genomics/transcriptomics.
Protein Mcp Server
MCP Server for 3D protein structural data retrieval & analysis from RCSB PDB, PDBe, and UniProt.
binder-design
Guidance for choosing the right protein binder design tool. Use this skill when: (1) Deciding between BoltzGen, BindCraft, or RFdiffusion, (2) Planning a binder design campaign, (3) Understanding trade-offs between different approaches, (4) Selecting tools for specific target types. For specific tool parameters, use the individual tool skills (boltzgen, bindcraft, rfdiffusion, etc.).